Package: phymapnet 0.1.3
phymapnet: Phylogeny-Guided Bayesian Microbial Network Inference
Implements a phylogeny-aware Bayesian graphical modeling framework for microbial network inference using a shrinkage precision estimator guided by a phylogenetic kernel, with optional hyperparameter-ensemble edge reliability analysis.
Authors:
phymapnet_0.1.3.tar.gz
phymapnet_0.1.3.zip(r-4.7)phymapnet_0.1.3.zip(r-4.6)phymapnet_0.1.3.zip(r-4.5)
phymapnet_0.1.3.tgz(r-4.6-any)phymapnet_0.1.3.tgz(r-4.5-any)
phymapnet_0.1.3.tar.gz(r-4.7-any)phymapnet_0.1.3.tar.gz(r-4.6-any)
phymapnet_0.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
phymapnet/json (API)
| # Install 'phymapnet' in R: |
| install.packages('phymapnet', repos = c('https://rosaaghdam.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:c0eb1191c0. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 136 | ||
| source / vignettes | OK | 205 | ||
| linux-release-x86_64 | OK | 123 | ||
| macos-release-arm64 | OK | 151 | ||
| macos-oldrel-arm64 | OK | 195 | ||
| windows-devel | OK | 76 | ||
| windows-release | OK | 98 | ||
| windows-oldrel | OK | 79 | ||
| wasm-release | OK | 100 |
Exports:phymapnet_fitphymapnet_prepare_inputsphymapnet_reliability
Dependencies:apebayesmcompositionsDEoptimRdigestlatticeMASSnlmeRcppRcppArmadillorobustbasetensorA
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fit a single PhyMapNet model | phymapnet_fit |
| Prepare inputs for PhyMapNet | phymapnet_prepare_inputs |
| Edge reliability via hyperparameter ensemble | phymapnet_reliability |
